PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g03540.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8808.51 Da    PI: 10.4802
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g03540.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA136.56e-431180270
                            S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                    +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe
  Zjn_sc00058.1.g03540.1.sm.mkhc 11 NVVIEEVsKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80
                                    56777877*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190138.0E-81280No hitNo description
PfamPF046898.3E-401680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MAEQFADSAN NVVIEEVSKG LNPGMIVLLV VASFLLLFFV GNYALYVYAQ KTLPPKKKKP  60
VSKKKLKREK LKQGVSAPGE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919814e-76FP091981.1 Phyllostachys edulis cDNA clone: bbasst002p11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.11e-32PREDICTED: DNA-binding protein S1FA2
SwissprotQ7XLX61e-34S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D3FVJ57e-33A0A0D3FVJ5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKE54e-33A0A0D9ZKE5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H0D24e-33A0A0E0H0D2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8S34e-33A0A0E0P8S3_ORYRU; Uncharacterized protein
STRINGBGIOSGA015143-PA3e-32(Oryza sativa Indica Group)
STRINGLOC_Os04g33440.23e-32(Oryza sativa Japonica Group)
STRINGOB04G18770.16e-32(Oryza brachyantha)
STRINGORGLA04G0086600.13e-32(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563